Table of Contents

Import packages

Read Enm pickle object

Calculate node positions with spring layout

This could be different from the ones shown in paper due to random node position calculation

This does not change any claims in the paper

Network plot

Figure 1B, left

Figure 1B, right

Figure 1C

get_clustered_nodes finds the gene names belonging the outmost, smaller cluster for rows and columns as shown.

rc: row cluster

cc: column cluster

Figure 1D

Figure 3C

Figure 4B

Figure 5D/F